shahrbanoo karbalaee wrote:
Dear justin
how do I know,what is the name of atom 17 in rmsf table of backbone group.?
It should be whatever the 17th atom in the analyzed group is.
-Justin
# g_rmsf -f md.xtc -s md.tpr -o traj_rmsfbackbon.xvg -ox
traj_avgazrmsfbackbon.pdb
#
# g_rmsf is part of G R O M A C S:
#
# God Rules Over Mankind, Animals, Cosmos and Such
#
@ title "RMS fluctuation"
@ xaxis label "Atom"
@ yaxis label "(nm)"
@TYPE xy
1 0.0351
2 0.0228
3 0.0233
4 0.0220
5 0.0206
6 0.0187
7 0.0190
8 0.0206
9 0.0211
10 0.0184
11 0.0178
12 0.0210
13 0.0182
14 0.0186
15 0.0224
16 0.0249
17 0.0276
18 0.0235
19 0.0241
......................I delet by hand for low space
39 0.0283
40 0.0488
--best
sh-karbalaee
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--
========================================
Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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