Dear Nitu madam,

You can directly go for simulation of lipid+protein complex if u r using a
pre-equilibrated bilayer as from Dr. Tieleman's website.

Regards,
Pawan

2009/3/31 nitu sharma <sharmanit...@gmail.com>

> Dear all,
>
>                   I  am trying to simulation of membrane proteins  I have a
> basic question can we directly go for simulation of lipid+protein complex
> without doing simulation of individually simulation of lipid bilayer
> because  I am facing lot of problem with topology file for lipid bilayer .
>
> please any one suggest me whats the right thing I have to do.
>
>
> thanks.
>
> nitu sharma
> School of life Sciences
> Jawaherlal nehru university
> New delhi,India
>
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