Hello, I have been trying to figure out why I'm getting this message. I looked over this site http://chemistry.csulb.edu/ffamber/index.html#usage
But could not figure out why I'm getting this error. I'm running pdb2gmx_d.exe -ff amber03 WARNING: atom H is missing in residue LYSH 124 in the pdb file You might need to add atom H to the hydrogen database of residue LYSH in the file ff???.hdb (see the manual) WARNING: atom HA is missing in residue LYSH 124 in the pdb file You might need to add atom HA to the hydrogen database of residue LYSH in the file ff???.hdb (see the manual) WARNING: atom HB1 is missing in residue LYSH 124 in the pdb file You might need to add atom HB1 to the hydrogen database of residue LYSH in the file ff???.hdb (see the manual) -- Jack http://www.facebook.com/home.php#/profile.php?id=832713248 http://hydrogenathome.org _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php