----- Original Message ----- From: Nuno Azoia <naz...@det.uminho.pt> Date: Monday, March 9, 2009 21:52 Subject: Re: [gmx-users] editconf and genbox using method To: Discussion list for GROMACS users <gmx-users@gromacs.org>
> Hello! > > Your box isn't rectangular. Your problem is just VMD display the gro > file with a rectangular shape. If you need to see your system properly > try to transform your .gro file in a .pdb file first, using trjconv. > > Try trjconv -h to see the options I don't believe this is correct. That would be a bizarre thing for VMD to do. Much more likely is that editconf actually selected a rectangular box, genbox filled it, and VMD is displaying what's in the file. Mark _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
