Hello,
I'm trying to compile Gromacs-4.0.3 on one of our clusters in my local
directory (the OS is CentOS release 4.2). The compilation only produces
3 warnings:
pme.c:964: warning: dereferencing type-punned pointer will break
strict-aliasing rules
pppm.c:387: warning: dereferencing type-punned pointer will break
strict-aliasing rules
libtool: link: warning:
`/usr/lib/gcc/i386-redhat-linux/3.4.4/../../..//libxml2.la' seems to
be moved
When I run the simple gmxtest, grompp produces the following error:
Source code file: strdb.c, line: 122
Fatal error:
Cannot read string from buffer
So, something is wrong, but I can't figure out who is the culprit. Does
anyone ever face this kind of error? I'm quite puzzled... Note that I
have previously installed fftw-3.2.1 in my local directory and that I
have configure the Gromacs installation using the following commands:
include=$HOME/local/bin/fftw-3.2.1/include
library=$HOME/local/bin/fftw-3.2.1/lib
./configure --prefix $HOME/local/bin/gromacs4-test --without-x
CC=/usr/bin/gcc CPPFLAGS=-I$include LDFLAGS=-L$library
Thanks,
Nicolas
begin:vcard
fn:Nicolas Sapay
n:Sapay;Nicolas
org:University of Calgary;Biological department
adr:;;2500 University drive NW;Calgary;AB;T2N 1N4;Canada
email;internet:nsa...@ucalgary.ca
title:Post-doctoral fellow
tel;work:403-220-6869
x-mozilla-html:TRUE
url:http://moose.bio.ucalgary.ca/
version:2.1
end:vcard
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