Srinivasan Ramachandran wrote:
Hi,
Can anyone help with the error we are getting while running this tutorial.
command is
grompp –f em.mdp –c trp_b4em.pdb –p trp.top –o em.tpr
error is
Number of coordinates in coordinate file (trp_b4em.pdb, 28381) does not
match with topology file(trp.top, 28397)
We follow as per the guide but quite not able to figure out where the
error is?
You likely have not updated your topology correctly after making some
modification, like adding ions.
http://wiki.gromacs.org/index.php/Errors#Number_of_coordinates_in_coordinate_file_does_not_match_topology
-Justin
With Kind Regards
Ramu
Dr. S. Ramachandran
Scientist EI
Institute of Genomics and Integrative Biology, Mall Road, Near Jubilee Hall
Delhi 110 007, India
Tel: 2766-6156
Fax:2766-7471
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--
========================================
Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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