Hi, Justin: I saw in the manual that by g_energy -vis the viscosity of the system can be calculated. But when I perform the command i got this:
@ title "Bulk Viscosity" @ xaxis label "Time (ps)" @ yaxis label "\8h\4 (cp)" @TYPE xy @ view 0.15, 0.15, 0.75, 0.85 @ legend on @ legend box on @ legend loctype view @ legend 0.78, 0.8 @ legend length 2 @ s0 legend "Shear" @ s1 legend "Bulk" 19.9601 182.954 131.299 39.9202 195.973 134.808 59.8802 209.345 130.015 79.8403 220.959 129.291 99.8004 227.397 133.514 119.76 224.858 128.183 139.721 234.26 124.201 159.681 239.432 112.779 179.641 233.247 90.5362 199.601 235.796 83.3315 219.561 232.205 80.3525 239.521 219.87 78.862 259.481 216.261 84.9063 279.441 221.782 81.2453 299.401 221.704 76.6335 319.361 212.225 83.4834 339.321 209.746 95.7125 359.281 208.776 100.049 379.242 209.623 101.467 399.202 204.93 111.357 419.162 196.223 117.499 439.122 198.347 121.818 459.082 200.15 118.537 479.042 203.718 105.464 499.002 209.584 98.6823 518.962 215.025 101.854 538.922 226.533 102.949 558.882 229.609 97.6396 578.842 228.081 96.0029 598.802 237.529 95.4091 618.762 245.169 95.4332 638.723 253.263 97.1168 658.683 251.794 86.5936 678.643 242.619 72.306 698.603 235.621 63.5751 718.563 230.813 67.5429 738.523 236.095 78.8719 758.483 240.001 84.0771 778.443 246.356 88.0818 798.403 256.28 91.1965 818.363 267.644 95.403 838.323 272.758 102.16 858.283 278.369 101.837 878.243 281.149 98.535 898.204 268.186 93.7993 918.164 254.442 81.3065 938.124 239.547 78.0454 958.084 221.896 87.4938 978.044 213.811 103.699 998.004 207.287 113.678 My question is what the value should be for the viscosity of the fluid. Should I average all the values of third column to get the value. Does the value have a unit of cp? Thank you so much in advance! Yanmei Song Department of Chemical Engineering ASU _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php