Hi Jacob, Check the output from pdb2gmx. It works with the tutorial files, so the problem is with your input, not with the program.
Tsjerk On Thu, Jan 22, 2009 at 5:39 PM, <jahar...@chem.umass.edu> wrote: > I'm having issues with the pdb2gmx command in gromacs. It does not seem to be > creating the .gro file for some reason. When I enter the command: > > pdb2gmx -f trial1.pdb -p trial1.top -o trial1.gro > > I only end with a trial1.top file but no trial1.gro file. However, the pdb2gmx > command appears to work fine with the tutorial files that the developers have > provided. Any suggestions? Thanks in advance. > > Jacob A. Harvey > > jahar...@chem.umass.edu > > Chemistry > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
