Kwee Hong wrote:
Hi. When I was trying to do the test run for my installed gromacs, I got
message below return to me even though i've source GMXRC (source
/usr/local/gromacs/bin/GMXRC). Can some one tell me why? Thanks.
"Permission denied" means you're not allowed to write files to those directories
(you need admin privileges, i.e. sudo to do so). If the test script can't write
files, then all of the tests will fail.
-Justin
bcsb09s-imac52:bin bcsb09$ ./gmxtest.pl all
102 out of 102 simple tests FAILED
sh: grompp.out: Permission denied
No topol.tpr file in bin. grompp failed
FAILED. Check files in bin
sh: grompp.out: Permission denied
No topol.tpr file in include. grompp failed
FAILED. Check files in include
sh: grompp.out: Permission denied
No topol.tpr file in lib. grompp failed
FAILED. Check files in lib
sh: grompp.out: Permission denied
No topol.tpr file in share. grompp failed
FAILED. Check files in share
4 out of 4 complex tests FAILED
sh: grompp.out: Permission denied
No topol.tpr file in OpenSourceLicenses. grompp failed
FAILED. Check files in OpenSourceLicenses
sh: grompp.out: Permission denied
No topol.tpr file in OpenSourceVersions. grompp failed
FAILED. Check files in OpenSourceVersions
sh: grompp.out: Permission denied
No topol.tpr file in bin. grompp failed
FAILED. Check files in bin
sh: grompp.out: Permission denied
No topol.tpr file in gromacs. grompp failed
FAILED. Check files in gromacs
sh: grompp.out: Permission denied
No topol.tpr file in i386-mingw32-3.4.5. grompp failed
FAILED. Check files in i386-mingw32-3.4.5
sh: grompp.out: Permission denied
No topol.tpr file in include. grompp failed
FAILED. Check files in include
sh: grompp.out: Permission denied
No topol.tpr file in info. grompp failed
FAILED. Check files in info
sh: grompp.out: Permission denied
No topol.tpr file in lib. grompp failed
FAILED. Check files in lib
sh: grompp.out: Permission denied
No topol.tpr file in share. grompp failed
FAILED. Check files in share
9 out of 9 kernel tests FAILED
Opening pdb2gmx.log for writing at ./gmxtest.pl line 300.
Regards..
------------------------------------------------------------------------
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--
========================================
Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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