Gadzikano Munyuki wrote:
I want to analyse the solvent around a peptide . I used g_sdf and the output
that i am getting (i.e the refmol.gro) does not have the whole peptide molecule
but just the residues that i use to define the coordinate system . I then tried
to use g_spatialbut its doing something very different and not spatial
distibution, it looks like its executing g_cluster instead. I was wondering if
g_custer and g_spatial are meant to do the same thing.
Have a read of g_cluster -h and g_spatial -h and decide whether they're
doing the same thing :-)
Mark
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