Oh...Similar type of problem once I have got, so got reply from some one in archives that if use comm_grps= protein , protein will not come out of the water box.So thats why I have suggested, If I say wrong answer regret for that
>* Hi, *>* Ravi *>* Use comm_grps = protein in your .mdp file. *>* *>* *>* 3. protein coming out of the box (ravi sharma) *>* * No! You will ruin energy conservation... >* *>* Hello everyone *>* *>* my protein coming out of the box in final md how can i fix my *>* protein in the middle of the box. can you help me out?? *>* *
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