Dear gmx user I have a box which contain protein and solution. Before running I minimized it very well and also system is running. After 2 ns when I saw the trajectory in vmd I saw that ther is some lines like bondes in the system. eg, between oxygen group of one water molecule in one part of box with hydrogen atom of other water molecule in opposite part.
what do you think about this event? thanks _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
