Hello Tsjerk I have solved that problem, now while running PDB2GMX command its giving following error
C7 was not found in rtp file so I just compared the atom type in rtp file for DTHY and corresponding pdb file and replace C7 by C5M. i used -ignh option also,still I am getting warning like H1 is not found H3 is not found but the program is running its giving error while running GROMPP step. can you please help me in removing this error with regards -- PRASUN (ASHOKA)
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