Hi Prasun, I converted it using a script of mine (which unfortunately is not in a shape for shipping yet), and the output file gives me no problem. Looking at it, I notice a difference (do look at it with a fixed-width font):
dna.pdb:ATOM 7613 P DTHY I -72 17.935 138.346 27.497 1.00 81.39 out.pdb:ATOM 37 P DTHYI -72 17.935 138.346 27.497 1.00 81.39 To me it seems I was right that the residue name was shifted. Take better care when changing residue names. Cheers, Tsjerk On 9/19/08, prasun kumar <[EMAIL PROTECTED]> wrote: > > Hello Tsjerk > > I am attaching a file having a porttion of my PDB file,please check it.Its > working for all other nucleotides.There is problem only with DTHY > Thanx in advance > with regards > > -- > PRASUN (ASHOKA) > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read > http://www.gromacs.org/mailing_lists/users.php > > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
