On 06.09.2008, at 22:28, Vitaly Chaban wrote:

Hello,

Where can I read about the exact format of the TRR and XTC files. I
mean the width and type of every field in the binary trajectory file.

I see read_'next_frame(status,&fr)' function in 'template.c'. But
where is this fuction defined?
Sorry, I'm not an expert in C. :(


Hello,

if you have problems, finding appropiate header files for the functions of gmx, you can perhaps use a development environment like Eclipse, Source-Navigator, KDevelop, Anjuta depending on your flavour and operating system. This programs index all the functions in a specified project and you can look up their definitions by request without searching the files of the complete src-code. It is hard to rank the different programs due to their various capabilities and your requirements. Eclipse Ganymed is a special C/C++ Development environment and accesible for every OS. Furthermore it is modular and you can also advance it to a MATLAB-like enviroment including the PyDev module and using python modules like numpy and scipy. It is also capable of accesing CVS trees directly. In my opinion this program package is flexible and helpful. Once everything is installed and configured it can be handled very easily. The other mentioned packages are Red-Hat, KDE, and GNOME development environments. However as I mentioned at the end it is a question of flavor.

Best Regards,

Flo


Thanks.

--
Vitaly V. Chaban
School of Chemistry
National University of Kharkiv
Svoboda sq.,4, Kharkiv 61077, Ukraine
email: [EMAIL PROTECTED]
skype: vvchaban

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--
Florian Dommert
Dipl.-Phys.

Computational and Theoretical Softmatter & Biophysics group

Frankfurt Institute for Advanced Studies
Johann-Wolfgang-Goethe University

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