dear users I am trying to run the simulation fo a protein/DMSO system,Its working well till genbox but while running GROMPP I am gettin a fatal error,which is atom type 'SD' not found. SD is given in the gro & itp file of DMSO. what should I do to overcome this problem........ I have tried by replacing SD by S,but its of no use I should generate a separate top file for DMSO and then include it in the topology file generated for protein I tried to do this also using PDB2GMX command but again I am gettin error related to 'SD' please help me.......... regards &thanx in advance
-- PRASUN (ASHOKA)
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