Hi Parthiban, Do you have a particular reason for using the MPI version of trjconv? Do you have the same error with the standard version?
Cheers, Tsjerk On Mon, Aug 18, 2008 at 6:12 AM, M.Parthiban <[EMAIL PROTECTED]> wrote: > Hi > > I am encountering an error in file conversion from .trr file to .xtc file > using trjconv command, and this is for a dimer and a ligand bound complex > simulation. can you help me in knowing or to rectify this error which > follows., > > Thank you in advance > > Parthiban > ======================================================================= > Will write xtc: Compressed trajectory (portable xdr format) > trn version: GMX_trn_file (single precision) > Reading frame 0 time 0.000 > Setting output precision to 0.001 (nm) > > Back Off! I just backed up dimer_md.xtc to ./#dimer_md.xtc.1# > -> frame 1680 time 840.000 -> frame 1600 time 800.000 > trjconv_mpi:18542 terminated with signal 11 at PC=32380ec1ee > SP=7fbffed110. Backtrace: > /lib64/tls/libc.so.6(xdr_string+0xee)[0x32380ec1ee] > trjconv_mpi[0x421dc0] > trjconv_mpi[0x448d97] > trjconv_mpi(read_next_frame+0x47a)[0x44b3fa] > trjconv_mpi(gmx_trjconv+0x21db)[0x40ec6b] > /lib64/tls/libc.so.6(__libc_start_main+0xdb)[0x323801c3fb] > trjconv_mpi[0x40c77a] > ======================================================================== > > > > > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
