On Sat, 9 Aug 2008, jayant james wrote:

hi !
I am interested in plotting the RMSD between two amino acids to see if
they come close or move away during simulations.
Any suggestions would be helpful.
g_mindist

Thanks
Jayant James

--
Jayasundar Jayant James

www.chick.com/reading/tracts/0096/0096_01.asp)




David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
[EMAIL PROTECTED]       [EMAIL PROTECTED]   http://xray.bmc.uu.se/~spoel
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