hi, all I have a query that how to do PCA which further includes plotting the displacement of each C-alpha along first eigenvector having largest eigenvalue. I read in many articles that this can be done using gromacs. I did my MD simutaion using charmm forcefield and NAMD. I have converted my dcd file trr and using g_covar covariance analysis. But i am not getting anything regarding relevant
Thanking in Anticipation -- SUNITA GUPTA
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