Hi: I equilibrated a DPPC membrane that I built. I want to take a snapshot for doing some protein-membrane simulations, but first i have to do somethings for eliminating the lipids out of the box. I have tried with pbc and fit options like people say in the list and it doesn't work. Anybody can help me, please?
I did things like that and more too (with many combinations): 1) trjconv -s a.tpr -f a.xtc -o b.xtc -center tric -ur compact -pbc none trjconv -s a.tpr -f b.xtc -o c.xtc -fit rot+trans 2) trjconv -s a.tpr -f a.xtc -o b.xtc -center tric -ur compact -pbc nojump trjconv -s a.tpr -f b.xtc -o c.xtc -pbc whole trjconv -s a.tpr -f c.xtc -o d.xtc -fit rot+trans I'll apreciate any help, Maite _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
