Vitaly Chaban wrote:
I did not fully understand about this command.
Could anyone explain this more?
Thanks a lot

include:
directories to include in your topology. Format:
-I/home/john/my_lib -I../more_lib

This is a directory where your topology files are placed, isn't it?


More or less, yes. By default, Gromacs searches $GMXLIB and the current working directory for the necessary topology information. The "include = -I" line can be used to specify the location(s) of other necessary topologies.

-Justin

--
========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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