Hi, On Monday, 9. June 2008 13:34, Anamika Awasthi wrote: > Dear Friends, > I want to extract conformations of each 1 ns from my 10 ns > simulation. > My this job is running for 20 ns, so shall I first stop my job and > then do this? > I tried this command without stopping my job > trjconv -f *.trr -o *.pdb -s *.tpr -b -0 -e -10 -dump -1000
try something like: trjconv -f traj.trr -s start.tpr -o conformation.pdb - dt 1000 -sep It will split the file already to pdb file. Read also: http://wiki.gromacs.org/index.php/Average_Structure > > Please tell me the solution of my this problem > > Thanks > Anamika Greetings, Florian -- ------------------------------------------------------------------------------- Florian Haberl Computer-Chemie-Centrum Universitaet Erlangen/ Nuernberg Naegelsbachstr 25 D-91052 Erlangen Telephone: +49(0) − 9131 − 85 26573 Mailto: florian.haberl AT chemie.uni-erlangen.de ------------------------------------------------------------------------------- _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
