Dear Gromacs Users, I am using g_sas program of gromacs to calculate SASA, using -pbc flag. It seems to me that the program does not take into account the periodic boundary conditions. Even thought this problem is mentioned in the mailing list, it still not clear whether the program can or cannot take into account the periodicity. i am using gromacs3.3.2 . Could anyone please clarify this.
With Regards, Gurpreet Singh
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