serdar durdagi wrote: > Dear all, > > I made a simulation with 2.5 ns (with 12500 frames), when I want to > open this *.xtc file in VMD, it fails. it can read around 50% of > frames and than complains low virtual memory (actually I am using a PC > that has 1GB RAM). Hello,
if you just want to watch the movie using vmd, don't use every frame, when opening the xtc-file. Perhaps every 10th or 20th is enough and you won't get out of memory. Best Regards Flo > > Thus, I would like to cut my *.xtc file to small subtrajectory files. > In gromacs manual, it says it is possible with trjconv option together > with sub. But it's not clear how can I give a command let's say to > divide my whole trajectory file to 5 subtrajectories. > > Thank you very much in advance for your comments. > > > Serdar > > > > > ------------------------------------------------------------------------ > Nicht vergessen! Am Sonntag, den 11. Mai ist *Muttertag > <http://www.yahoo.de/muttertag>* > Geschenkideen, Gedichte & mehr: www.yahoo.de/muttertag > <http://www.yahoo.de/muttertag>. > ------------------------------------------------------------------------ > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- Florian Dommert Dipl.-Phys. Computational and Theoretical Softmatter & Biophysics group Frankfurt Institute for Advanced Studies Johann-Wolfgang-Goethe University Ruth-Moufang-Str. 1 60438 Frankfurt am Main Phone: +49(0)69 / 798 - 47522 Fax: +49(0)69 / 798 - 47611 EMail: [EMAIL PROTECTED] Home: http://fias.uni-frankfurt.de/~simbio/Florian_Dommert
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