Dear Mark,
Hi ! Currently I tried to install xmgrace but the toolbar menue is not shown on
window screen so I am using gnuplot for analysis as I have little know how
about unix/linux.Please set to me the following.
[EMAIL PROTECTED]:~> cd project
[EMAIL PROTECTED]:~/project> ls
#bfac.pdb.1# conf.pdb genion.log md323.tpr pr.edr topol_A.itp
#rmsf.xvg.1# dist.xvg gyrate.xvg md323.trr pr.gro topol_B.itp
#topol.top.1# distance.xvg index.ndx md323.xtc pr.log traj.trr
#traj.trr.1# em.mdp ions.pdb md323lie.xvg pr.mdp water.pdb
2a5f.pdb em.pdb md323.edr mdout.mdp pr.tpr
bfac.pdb em.tpr md323.gro pe.xvg pr.trr
bonds.xvg ener.edr md323.log posre_A.itp rmsf.xvg
box.pdb energy.xvg md323.mdp posre_B.itp topol.top
[EMAIL PROTECTED]:~/project> gnuplot
G N U P L O T
Version 4.2 patchlevel 0
last modified March 2007
System: Linux 2.6.22.5-31-default
Copyright (C) 1986 - 1993, 1998, 2004, 2007
Thomas Williams, Colin Kelley and many others
Type `help` to access the on-line reference manual.
The gnuplot FAQ is available from
http://www.gnuplot.info/faq/
Send comments and help requests to <[EMAIL PROTECTED]>
Send bug reports and suggestions to <[EMAIL PROTECTED]>
Terminal type set to 'x11'
gnuplot> plot "rmsf.xvg" u 1:2 w
^
expecting 'lines', 'points', 'linespoints', 'dots', 'impulses',
'yerrorbars', 'xerrorbars', 'xyerrorbars', 'steps', 'fsteps',
'histeps', 'filledcurves', 'boxes', 'boxerrorbars', 'boxxyerrorbars',
'vectors', 'financebars', 'candlesticks', 'errorlines', 'xerrorlines',
'yerrorlines', 'xyerrorlines', 'pm3d', 'labels', 'histograms',
'image', 'rgbimage'
gnuplot> boxes
^
invalid command
gnuplot> plot lines "rmsf.xvg" u 1:2 w
undefined variable: lines
gnuplot> plot gyrate.xvg
undefined variable: gyrate
gnuplot> plot "gyrate.xvg"
^
Bad data on line 9
gnuplot>
Regards,
Lal badshah
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