Hi,
You probably didn't find it because it's not so popular for simulations.
My suggestion is to look very carefully in the literature. Transition
metals are difficult to models, especially when you need to take into
account both their interactions with water and with proteins - see e.g.:
@Article{Project:2008:J-Comput-Chem:18074346,
author = "Project, E and Nachliel, E and Gutman, M",
title = {Parameterization of Ca+2-protein interactions for molecular dynamics
simulations},
abstract = {Molecular dynamics simulations of Ca+2 ions near protein were
performed with three force fields: GROMOS96, OPLS-AA, and CHARMM22. The
simulations reveal major, force-field dependent, inconsistencies in the
interaction between the Ca+2 ions with the protein. The variations are
attributed to the nonbonded parameterizations of the Ca+2-carboxylates
interactions. The simulations results were compared to experimental data, using
the Ca+2-HCOO- equilibrium as a model. The OPLS-AA force field grossly
overestimates the binding affinity of the Ca+2 ions to the carboxylate whereas
the GROMOS96 and CHARMM22 force fields underestimate the stability of the
complex. Optimization of the Lennard-Jones parameters for the Ca+2-carboxylate
interactions were carried out, yielding new parameters which reproduce
experimental data.},
journal = "J Comput Chem",
year = "2008",
volume = "29",
number = "7",
pages = "1163-1169",
month = "May",
pmid = "18074346",
url = "http://www.hubmed.org/display.cgi?uids=18074346";,
doi = "10.1002/jcc.20876"
}
Ran.
Prettl Zsolt wrote:
> Hello!
>
> I would like to use Cr3+ for my molecule modelling but I just could
> not find a suitable one for Gromacs anywhere. If somebody has any
> suggestion, from when can I download it, please write me ASAP, because
> it is very-very important!!!!
>
>
>
> Thanks in advance,
>
> Zsolt
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> gmx-users mailing list gmx-users@gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to [EMAIL PROTECTED]
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
_______________________________________________
gmx-users mailing list gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
