On Friday 18 April 2008 10:37 am, Mark Abraham wrote: > Anthony Cruz wrote: > > > You seem to want to let your domains move relative to each other, but > > > > > > also to deny them much internal freedom. So what you want to do is > > > > > > enforce (some of) their internal structure. Thus, use distance > > > > restraints. > > > > > Mark > > > > Thank you for your answer. But probably I don't make my point clear. I > > have a protein with two units (domains). I think that distant restraint > > will restraint the distance between the two domains or units... This is > > done by the linkers between them. I want them to move freely but not to > > change its structure, like freezing the backbone and let the rest to > > move freely. > > > > How I could do this? > > Distance restraints to "enforce their *internal structure*"... So don't > restrain all the distances, just some cunningly chosen ones inside each > domain. > > Mark
Now its clear! Thank you very much!!! Anthony > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
