SWAPNA wrote:
Dear gmx users,

I have a basic query.
With respect to which structure are the rmsf values calculated per each atom?

is it w.r.t average structure of the protein or the reference structure that we provide using -s option?

I dont find any explanation of the output generated using g_rmsf. Please make this clear.

Look at g_rmsf -h because the reference structure is explained there.

Mark
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