Hi Chandu,
this looks like you have two statements #include "lipid.itp", so check
all your *.top and *.itp files.
Ciao,
Patrick
[EMAIL PROTECTED] a écrit :
Dear All,
I have been trying to simulate a small peptide in a DMPC lipid bylayer.
Same setup is working fine in one computer (cluster) but I am getting the
following error message in another cluster.
grompp_mpi -f test.mdp -c lipid_protein.gro -p topology.top -o test.tpr
checking input for internal consistency...
calling /lib/cpp...
processing topology...
WARNING 1 [file "lipid.itp", line 14]:
Overriding atomtype LO
WARNING 2 [file "lipid.itp", line 15]:
Overriding atomtype LOM
WARNING 3 [file "lipid.itp", line 16]:
Overriding atomtype LNL
WARNING 4 [file "lipid.itp", line 17]:
Overriding atomtype LC
WARNING 5 [file "lipid.itp", line 18]:
Overriding atomtype LH1
WARNING 6 [file "lipid.itp", line 19]:
Overriding atomtype LH2
WARNING 7 [file "lipid.itp", line 20]:
Overriding atomtype LP
WARNING 8 [file "lipid.itp", line 21]:
Overriding atomtype LOS
WARNING 9 [file "lipid.itp", line 22]:
Overriding atomtype LP2
WARNING 10 [file "lipid.itp", line 23]:
Overriding atomtype LP3
Cleaning up temporary file grompp16bicP
-------------------------------------------------------
Program grompp_mpi, VERSION 3.3.1
Source code file: fatal.c, line: 416
Fatal error:
Too many warnings, grompp_mpi terminated
-------------------------------------------------------
Please let me know how to get rid of this problem.
Thanks in advance
Regards
Chandu
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Patrick FUCHS
Equipe de Bioinformatique Genomique et Moleculaire
INSERM U726, Universite Paris 7
Case Courrier 7113
2, place Jussieu, 75251 Paris Cedex 05, FRANCE
Tel : +33 (0)1-44-27-77-16 - Fax : +33 (0)1-43-26-38-30
Web Site: http://www.dsimb.inserm.fr/~fuchs
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