Quoting sudheer babu <[EMAIL PROTECTED]>: > Hi all, > I gave 1ns run production step without velocities in md.mdp file, in between > my simulation crashed, so I used *tpbconv for continue that crashed run , > After finishing that I used *trjcat for catenation of my 2 simulation > trajectory files, its shown only 900ps trajectory files into trjout.xtc not > 1000ps without error. By using this I plotted rmsd its shown that only > 900ps values graph. > what could be the reason for not getting 1000ps trajectory values, pls give > me suggestion, > Thanks in advance. >
In the absence of your exact command lines, we can only assume that you have used the tools incorrectly. Provide the commands you issued and we might be able to help. -Justin ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
