thanks for the help... sorry I made a mistake with flags -f -e in the mail Swapna
On Tue, Mar 18, 2008 at 4:43 PM, Mark Abraham <[EMAIL PROTECTED]> wrote: > SWAPNA wrote: > > Dear gmx users, > > I am using g_anaeig to filter my traj along the first eigenvector. > > > > 'g_anaeig -b 5000 -f 15000 -v eigenvec.trr -f calpha.tpr -s calpha.xtc > > -first 1 -last 1 -filt alongeigvec1 -dt 100' > > 5000ps to 15000ps has equilibriated trajectory. So I am using that to > > perform essential dynamics. > > > > When I do this it gives segmentation fault as below > > ------------ > > Reading frame 0 time 0.000 Segmentation fault > > ----------------- > > The -f flag doesn't accept a number. > > > When I give -b 0 -e 15000 it works without any problem. > > But it stops reading frames before the end time is 15000. > > > > ----------- > > Reading frame 29000 time 14500.001 > > ---------- > > > > can I get filtered trajectory for -b 5000 -f 15000 ? > > No, but you might be able to get one for -b 5000 -e 15000. > > Use gmxcheck on the trajectory to see what it contains. > > Mark > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- The logic of life lies exclusively neither in the most incredible detail, nor in the most sweeping synopsis.
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