Dear GMX-developers (in particular dear Carsten Kutzner), to overcome problems in making parallel runs with GROMACS on a Linux cluster with Gigabit Ethernet interconnection, I downloaded the package gmx_all-to-all to speed up the processes. In the instructions, however, this package is indicated for GROMACS version 3.3.1, whereas in our cluster we installed the 3.3.2 version. Is gmx_alltoall compatible also with this version? Another question: if we will upgrade to GROMACS 4 when it will be released, are you expecting that (nearly) all problems in parallelizazion will be solved or this package will be still useful/required/necessary? Many thanks in advance and best regards Anna Marabotti
______________________________________________ Anna Marabotti, Ph.D. Laboratorio di Bioinformatica e Biologia Computazionale Istituto di Scienze dell'Alimentazione, CNR Via Roma 52 A/C 83100 Avellino (Italy) Tel: +39 0825 299651 Fax: +39 0825 781585 Skype: annam1972 E-mail: [EMAIL PROTECTED] Web page: http://bioinformatica.isa.cnr.it/anna.htm ____________________________________________________ "If you think you are too small to make a difference, try sleeping with a mosquito" _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
