Quoting pragya chohan <[EMAIL PROTECTED]>: > > hello users > I am trying to do analysis after bilayer simulation. I cannot get any > experimental data on POPC to validate my model with. Can the people who are > working on same lipid tell me some references and also what analysis should > be done of the bilayer before putting protein into it?
I spent less than two minutes on Google and found papers giving all sorts of experimental parameters (density, area per headgroup, bilayer thickness, etc). I suggest you try the same. In terms of the analysis you need to do, that is up to what question you are asking and why you are simulating this particular lipid. Refer to the literature and find papers by groups that have simulated proteins in POPC (and perhaps proteins in membranes in general) to determine what they have found relevant, and apply the same to your system. -Justin > _________________________________________________________________ > Tried the new MSN Messenger? ItÂ’s cool! Download now. > http://messenger.msn.com/Download/Default.aspx?mkt=en-in ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
