On Thursday 31 January 2008 18:36, pragya chohan wrote: > hello users > please can you tell me how to calculate surface area per lipid, orer > parameters, area per head group of lipid from simulation thanks in advance
There are different methods to calculate the area per lipid, check the literature. The easiest way is to divide the area of the box by the number of lipids. To get the order parameters you need to make an index file that contains all the atoms you want to include in the order parameter calculation. Use make_ndx. After that, try g_order. You may also want to read the manual. > _________________________________________________________________ > Post ads for free - to sell, rent or even buy.www.yello.in > http://ss1.richmedia.in/recurl.asp?pid=186 _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
