Dear Groamcs users,
I calcualted the average structure from the simulation trajectory. when I calculate the rmsd of the protein to this average sturture, it is giving average rmsd of 0.16 nm. But, it is not clear for me why the average sturcture is never adapted rmsd near (or equal) to zero. I did not calculate the rmsd with respect to the starting structure either. Any clue? Thanks in advance! _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
