Quoting hhhh huan <[EMAIL PROTECTED]>:

> i found that the molecules are not at the center of
> the box everytimes after the simulation..they always
> appear at a side of the box..izzit it is related with
> the energy minimization?
> thankz

http://wiki.gromacs.org/index.php/Periodic_Boundary_Conditions

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========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
[EMAIL PROTECTED] | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/

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