> I've to run a simulation in a box filled with chloroform. > I'm using GROMACS with amber99 force field but I'm a beginner > and I have no idea about how to set up the box or where to > find the topology.
I would suggest you have a read of http://wiki.gromacs.org/index.php/Beginners That should help you well on your way, as will having a good read of the GROMACS manual. Catch ya, Dr. Dallas Warren Lecturer Department of Pharmaceutical Biology and Pharmacology Victorian College of Pharmacy, Monash University 381 Royal Parade, Parkville VIC 3010 [EMAIL PROTECTED] +61 3 9903 9524 --------------------------------- When the only tool you own is a hammer, every problem begins to resemble a nail. _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
