> I've to run a simulation in a box filled with chloroform.
> I'm using GROMACS with amber99 force field but I'm a beginner 
> and I have no idea about how to set up the box or where to 
> find the topology.

I would suggest you have a read of
http://wiki.gromacs.org/index.php/Beginners

That should help you well on your way, as will having a good read of the
GROMACS manual.

Catch ya,

Dr. Dallas Warren
Lecturer
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
[EMAIL PROTECTED]
+61 3 9903 9524
---------------------------------
When the only tool you own is a hammer, every problem begins to resemble
a nail.
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