I installed ffamber ports for gromacs, generated gro and topology files for a DNA structure with pdb2gmx, a box with editconf and added solvation with genbox. When I try to run grompp i obtain these errors:
checking input for internal consistency... calling cpp -traditional... processing topology... Generated 2628 of the 2628 non-bonded parameter combinations Generating 1-4 interactions: fudge = 0.5 Generated 2628 of the 2628 1-4 parameter combinations ERROR 0 [file "gr_Nast.top", line 761]: No default Bond types ERROR 0 [file "gr_Nast.top", line 3352]: No default Angle types ERROR 0 [file "gr_Nast.top", line 3354]: No default Angle types It seems gromacs don't read ffamber* force field information, however i using the directive include = -I\home\jantonioms\Programs\gromacs\share\gromacs\top in *.mdp file Can anyone have an idea? Thanks for help. _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
