hi I had installed make_hole utility earlier but when i tried to run: make_hole.pl -f box_popc.pdb -o hole_popc.pdb -r 9.0 -lipat P8 -lipid POPC -cx 51.5 -cy 51.8 I get : bash: make_hole.pl: command not found. I tried reinstalling it by ./configure which completed successfully but when i ran make command i get the following error:
nonbonded.c:272: error: `esolSPC' undeclared (first use in this function) nonbonded.c:272: error: (Each undeclared identifier is reported only once nonbonded.c:272: error: for each function it appears in.) nonbonded.c:276: error: `esolTIP4P' undeclared (first use in this function) nonbonded.c:472: error: `enlistWATER' undeclared (first use in this function) nonbonded.c:476: error: `enlistWATERWATER' undeclared (first use in this function) nonbonded.c: In function `do_nonbonded14': nonbonded.c:542: error: `eelRF_NEC' undeclared (first use in this function) nonbonded.c:569: error: `epbcFULL' undeclared (first use in this function) make[5]: *** [nonbonded.lo] Error 1 make[5]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src/gmxlib/nonbonded' make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src/gmxlib/nonbonded' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src/gmxlib' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src' make[1]: *** [all] Error 2 make[1]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src' make: *** [all-recursive] Error 1 Please help me.... _________________________________________________________________ Check out some new online services at Windows Live Ideas—so new they haven’t even been officially released yet. http://www.msnspecials.in/windowslive/_______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
