Hi Mark, I am so sorry, but I erased your mail before reading it. So, could you please send the mail one more time? It is important to me.
Thank you very much Ozge -----Original Message----- From: "OZGE ENGIN" <[EMAIL PROTECTED]> To: gmx-users@gromacs.org Date: Sun, 04 Nov 2007 13:36:02 +0200 Subject: [gmx-users] Placing a peptide at the air/water interface Hi all, I am performing a simulation of an amphilic peptide at air/water interface. I want to start to simulation in which the peptide is placed at the interface. I changed the center of the system so that the center is now located at interface. Then, I used editconf command with -c option in order to center the peptide. I expect to place the peptide at interface. However, instead of placing it at interface, the center of the box is changed its old values. How can I place the peptide at air/water interface before starting a simulation? Thanks in advance Ozge. _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
