pragya chohan wrote:
hi... i have to make an itp file for alamethicin .... already tried
prodrg2 but no success..... pls suggest a way for making .itp file
...... residue already defined in ffgmx.rtp. ...already read
earlier query posted but could not find an ans.
pls rite norml Engspeak in full sentses
Try contacting Peter Tieleman and asking for the topology. He has
posted many pdbs for alamethicin on his groups website:
http://moose.bio.ucalgary.ca/index.php?page=Structures_and_Topologies
You can find his email address here:
http://moose.bio.ucalgary.ca/index.php?page=Peter_Tieleman
http://wiki.gromacs.org/index.php/Steps_to_Perform_a_Simulation
Mark
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