harpreet singh wrote:
Dear sir,
I am trying to fit two confomations of a protein using g_confrms
command. The program is giving the result but when I am trying to use
two different proteins it is giving the following error.
command: g_confrms -f1 1prg.pdb -f2 speptide.pdb -o fit.pdb
-------
Then it asked to "Select group from first structure" and "Select group
from second structure", then I gave "0" (System) for both.
At the end it has shown the following error:
"-------------------------------------------------------
Program g_confrms, VERSION 3.3.1
Source code file: gmx_confrms.c, line: 467
Fatal error:
You selected groups with differen number of atoms.
-------------------------------------------------------"
While in the manual it is mentioned that we can use PDB files with
different atoms.
Suppose I have a set of 4 atoms and a set of 3 atoms. How would you like
them to be superposed?
Mark
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