Dear All, - So I "think" I succeeded in running gromacs on a 4-core node. How does one confirm this without looking at the speed. i.e, where is it mentioned in the log file what the number of processors is ? I do get 4 different log files for 4 processors, is that the final evidence ?
- The nice level by default is too high (19). One can change this by compiling mdrun with a nonice option. However, does it really matter if one is running gromacs on a dedicated supercomputing node ? Also, one can change the nice level by -nice in the mdrun command. So, in principle, there is no need to recompile mdrun ? Thank you so very much for the inputs, -Maria -- Maria G. Technical University of Denmark Copenhagen
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