andrea carotti wrote:
Hi and thanks for answering to my previous question.
Now I'm calculating the rmsd between two trajectories (-f2 option).
One is made by 2200 frames and the other has 33 frames..Now I've some
doubt about the output (rmsd.xvg), cause this file has only two columns
with 2200 rows ...i was imaging that it should have 2200 rows and 33
columns, am I wrong?
You should be getting such a 2200x33 matrix. My guess is that the
command line or files that you're using are not what you think they are :-)
The second question is something that is already been asked before..it
could be usefull to obtain the matrix 2200 x 33 in a human readable
file. Is it possible without hacking the code? Perhaps using external
scripts?
There's a human readable matrix form that can already be written. Check
out g_rms -h
Mark
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