Thank you for the suggestion ! Originally, there were about 250 residues. "182 residues" might be from the end-index of 'r_81_r_82_r_83_r_102_r_111_r_149_r_178_r_182' .
Do I make wrong index file ? or, is the result-file normal? Keunwan Park Mark Abraham wrote: > Keunwan Park wrote: > >> Dear all >> >> I use index file to make residue group and run g_mdmat function with the >> ndx file. >> >> For example, the residue groups are composed of 8 residues and the >> program said ... >> -------------------------------------------------------------------------- >> Selected 10: 'r_81_r_82_r_83_r_102_r_111_r_149_r_178_r_182' >> There are 182 residues with 100 atoms >> -------------------------------------------------------------------------- >> >> Why the program recognize 182 as a total residue number instead of 8 ? >> PixMap matrix file also show 182 residues. >> > > Were there 182 residues originally? > > >> How do I draw the matrix file with 8 residues ? >> > > You can use modes of trjconv and tpbconv to make trajectory and run > input files for only this subset of the residues and give those as input > to g_mdmat. > > Mark > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
