> running grompp I use the following command: > grompp -f mdout_test.mdp -c SWNT_6_6_144_b4em.gro -p SWNT_6_6_144.top > -maxwarn 10000 -pp > > It works but there is 1176 warnings, which I am assuming this is a > problem?
Yes. > Then I run mdrun using the following command: > Mdrun -s topol.tpr > It works just fine > Then I can view it with ngmx using the following command: > ngmx -f traj.xtc -s topol.tpr. > This works just fine as well. Adding together two random numbers gives you a random result, but this doesn't mean anything either :-) > My question is are the warnings ok/normal or is there some fix that needs > to > be made? No and yes, respectively. Mark _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
