Hello users I am using gromacs 3.3 with 43a1 force field.
My question is that if i run a simulation say for 50ns , Then if i carried out another md after this one than its time should start from ahead of 50 and not again from the beginning. but in my case everytime the time starts from the beginning. I know its a very basic question which i should not ask from the intelligentsia but this is irritating me from quiet a long time. so please tell me if this is a usual behaviour or some mistake is there in the input file input file : title = third at contant pressure equilibration integrator = md dt = 0.002 nsteps = 25000 nstxout = 500 nstlist = 10 ns_type = grid pbc = xyz coulombtype = PME vdwtype = cut-off Tcoupl = berendsen pcoupl = berendsen tau_t = 0.1 0.1 0.1 tc_grps = protein SOL CL- ref_t = 300 300 300 ref_p = 1 1 1 tau_p = 1 1 1 compressibility = 4.5e-5 4.5e-5 4.5e-5 pcoupltype = isotropic define = -DPOSRES comm_mode = angular constraints = hbonds constraint_algorithm = shake gen_vel = yes gen_temp = 300 After every run i am using the output gro file as an input for the next run Thanks & Regards
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