Dear all, I am having problem with genion. I have already search the gmx archive, and got the following message:
While using genion with -np 3, i get 2 lines of Replacing sol. xxx with Na and it hangs up. With -np 1 it works fine and replaces 1 SOL with Na. I thought it might be my system, so went to /tutor/speptide, but it was the same behaviour. I am using gromacs 3.3.1. As I recall genion worked fine under 3.2. I am wondering if this problem has already been fixed for version 3.3.1 and if a update for that is available. Is the only solution go back to 3.2? David van der Spoel has replied saying: there is a problem compiling gromacs using gcc 4.x that may cause this. see a recent bugzilla entry about it. any further help on that? Many thanks in advance, Luciane Dr Luciane Vieira de Mello School of Biological Sciences Room 2.20, Life Science Building Tel:(+44) 151 795 5140 FAX:(+44) 151 794 5130 University of Liverpool Crown St.,Liverpool L69 7ZB, U.K.
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