> Dear all There is a phosphate ser in my protein, so when pdb2gmx, the > fatal error is "atom p is not found" > > How to deal with this problem? how to add the topology file of > phosphate ion to residue database?
You'll need the Gromos96 43a1p force field parameters. Check out user-contributed force fields off of the main Gromacs site and you should find it. Also refer to http://wiki.gromacs.org/index.php/GROMOS -Justin ================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] (540) 231-9080 ================== _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
