Hi, I want to carry out normal mode analysis on a large protein (about 10,000 atoms) without using coarse grain approximations. Amber is out of the question since it can only handle about 5,000 atoms for NMA. I am wondering if GROMACS can deal with this assuming running on a 64-bit machine with 8G memory. I truely appreciate it if you can help.
Liwei Li Postdoctoral Associate Department of Biochemistry, Indiana University School of Medicine, 410 W. 10th Street, Suite 5000 Indianaposlis, IN 46202 Tel: (317)278-9185
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